| 2010| 2009 | 2008 | 2007 | 2006 |

2010

Hinchliffe, D. J., Meredith, W. R., Yeater, K. M., Kim, H. J., Woodward, A. W., Chen, Z. J., and Triplett, B. A. (2010) Near-isogenic cotton germplasm lines that differ in fiber-bundle strength have temporal differences in fiber gene expression pattern as revealed by comparative high-throughput profiling. Theor. Appl. Genet.PubMed

Wang, K., Guo, W, Yang, Z., Hu, Y., Zhang, W., Zhou, B., Stelly, D. M., Chen, Z. J., and Zhang, T. (2010) Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton. Chromosoma PubMed

Chen, Z. J. (2010) Molecular mechanisms of polyploidy and hybrid vigor. Trends in Plant Science 15:57-71.PubMed

Jackson, S. and Chen, Z. J. (2010) Genomic and expression plasticity of polyploidy. Current Opinions in Plant Biology (10.1016/j.pbi.2009.11.004)PubMed

Clark, G., Torres, J., Finlayson, S., Guan, X., Handley, C., Lee, J., Kays, J. E., Chen, Z. J., and Roux, S. J.(2010) Apyrase (NTPDase) and extracellular nucleotides regulate cotton fiber elongation in cultured ovules. Plant Physiology 152:1073-1083.PubMed

2009

Pang, M., Woodward, A. W., Agarwal, V., Ha, M., Guan, X., Vanitharani Ramachandran, V., Chen, X., Triplett, B. A., Stelly, D. M., and Chen, Z. J. (2009). Genome-wide analysis revealed rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.) Genome Biology 10:R122.PDF

Lu, Y., and Sze, S.H. (2009). Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. Nucleic Acids Res. 37, 463-472.PubMed

2008

Guo, Y.F., Saha, S., Yu, J.Z., Jenkins, J.N., Kohel, R.J., Scheffler, B.E., and Stelly, D.M. (2008). BAC-derived SSR markers chromosome locations in cotton. Euphytica 161, 361-370.PDF

Kim, H.J., and Triplett, B. (2008). Involvement of extracellular Cu/Zn superoxide dismutase in cotton fiber primary and secondary cell wall biosynthesis. Plant Signal Behav 3, 1119-1121. PubMed

Kim, H.J., Kato, N., Kim, S., and Triplett, B. (2008). Cu/Zn superoxide dismutases in developing cotton fibers: evidence for an extracellular form. Planta 228, 281-292. PubMed

Lu, Y., and Sze, S.H. (2008). Multiple sequence alignment based on profile alignment of intermediate sequences. J. Comput. Biol. 15, 767-777.www.liebertonline.com

Zhong, H., Lau, W.S., Sze, W.F., and Hung, Y.S. (2008). Shape recovery from turntable sequence using rim reconstruction. Pattern Recogn 41, 3295-3301.www.sciencedirect.com

Sze, S.C.W., Song, J.X., Wong, R.N.S., Feng, Y.B., Ng, T.B., Tong, Y., and Zhang, K.Y.B. (2008). Application of SCAR (sequence characterized amplified region) analysis to authenticate Lycium barbarum (wolfberry) and its adulterants. Biotechnol Appl Bioc. 51, 15-21.www.ncbi.nlm.nih.gov

2007

Chen, Z. J., Scheffler, B. E., Dennis, E., Triplett, B. A., Zhang, T., Chen, X., Stelly, D. M., Rabinowicz, P. D., Town, C. D., Arioli, T., Brubaker, C., Cantrell, R. G., Lacape, J. M., Ulloa, M., Chee, P., Gingle, A. R., Haigler, C. H., Percy, R., Saha, S., Wilkins, T., Wright, R. J., Van Deynze, A., Zhu, Y., Yu, S., Guo, W., Abdurakhmonov, I., Katageri, I., Ananda-Kumar, P., Rahman, M., Yusuf Zafar, Y., Yu, J. Z., Kohel, R. J., Wendel, J. F., and Paterson, A. H. (2007) Toward sequencing cotton (Gossypium) genomes. Plant Physiol.145:1303-1310. PubMed

Lee, J., Woodward, A. W., and Chen, Z. J. (2007) Gene expression changes and early events in cotton fiber development. Annals of Botany 100:1391-1401. PubMed

Udall, J. A., Cheung, F., Woodward, A. W., Swanson, J. M., Flagel, L., Hovav, R., Ryan A. Rapp, R. A., Nettleton, D., Lee, J. J., Gingle, A. R., Town, C., Chen, Z. J., Wendel, J. F. (2007). Spotted cotton oligonucleotide microarrays for gene expression analysis. BMC Genomics 8:81. PubMed

Lu S., Zhang F., Chen J. and Sze S.-H. (2007) Finding Pathway Structures in Protein Interaction Networks. Algorithmica 48: 363-374. www.springerlink.com

Yang Q. and Sze S.-H. (2007) Path Matching and Graph Matching in Biological Networks. Journal of Computational Biology 14:56-67. www.liebertonline.com

Yi G., Sze S.-H. and Thon M.R. (2007) Identifying Clusters of Functionally Related Genes in Genomes. Bioinformatics 23:1053-1060.bioinformatics.oxfordjournals.org

Chen J., Lu S., Sze S.-H. and Zhang F. (2007) Improved Algorithms for Path, Matching, and Packing Problems. Proceedings of the 18th Annual ACM-SIAM Symposium on Discrete Algorithms (SODA'2007):298-307.delivery.acm.org

Lu Y. and Sze S.-H. (2007) Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. proceedings of the 11th Annual International Conference on Research in Computational Molecular Biology (RECOMB'2007).Lecture Notes in Bioinformatics 4453:283-295.www.liebertonline.com

An, C.F., Saha, S., Jenkins, J.N., Scheffler, B.E., Wilkins, T.A., and Stelly, D.M. (2007). Transcriptome profiling, sequence characterization, and SNP-based chromosomal assignment of the EXPANSIN genes in cotton. Mol Genet Genomics 278, 539-553.www.springerlink.com

Zhong, H., Lau, W.S., Sze, W.F., and Hung, Y.S. (2007). Shape recovery from turntable image sequence. Lect Notes Comput. Sc. 4844, 186-195.www.springerlink.com

2006

Yang, S. S., Foo Cheung, J. J. Lee, Misook Ha, N. E. Wei, S.-H. Sze, D. M. Stelly, P. Thaxton, B. Triplett, C. D. Town, Z. J. Chen (2006) Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. Plant Journal 47:761-775. PubMed

Lee, J. J., O. S. Hassan, W. Gao, J. J. Wang, N. E. Wei, R. J. Kohel, P. Payton, X.-Y. Chen, D. M. Stelly, and Z. J. Chen (2006) Developmental and gene expression analyses of a cotton naked seed mutant using cotton oligo-gene microarrays. Planta 223: 418-432. PubMed

Gao, W., Z. J. Chen, J. Z. Yu, R. J. Kohel, J. E. Womack, D. M. Stelly (2006) Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome. Mol. Genet. & Genomics 275:105-113. PubMed

Sze, S.H., Lu, Y., and Yang, Q.W. (2006). A polynomial time solvable formulation of multiple sequence alignment. J Comput Biol.13, 309-319. www.liebertonline.com

Triplett, B.A., Kim, H.J., Hinchliffe, D., Sze, S.H., Thaxton, P., Stelly, D., and Chen, Z.J. (2007). Phytohormone regulation of cotton fiber development in vitro. Biotechnology and Sustainable Agriculture 2006 and Beyond 153-156 (495). www.springerlink.com